📄️ Aegle Environment Setup
Aegle is packaged and distributed as a Development container. This guide walks you through the process of setting up the development container for a user to perform analysis on multiplexed imaging data from PhenoCycler/CODEX platforms.
📄️ Aegle Alternative Setup (Docker via Enroot)
This guide describes how to run Aegle in an environment where Visual Studio Code or the Dev Containers extension cannot be used. While the guide describes a method that uses Enroot and Pyxis (for Slurm), users should adapt the below guide to their cluster environment to run the packaged Docker image from the GitHub Container Registry (GHCR).